nucleotide sequence
IRI: https://spec.industrialontologies.org/ontology/construct/NucleotideSequence
Defined In: https://spec.industrialontologies.org/ontology/biopharma/MolecularEntity/
SubClass Of: biological sequence
Class Hierarchy
owl:Thing › bfo:entity › bfo:continuant › bfo:generically dependent continuant › biological sequence › nucleotide sequence
Definition
biological sequence that is the ordered pattern of nucleotide residues that constitute a particular continuous DNA or RNA molecule
Examples
- The nucleotide sequence of a plasmid DNA molecule; The nucleotide sequence of an mRNA transcript; The nucleotide sequence of a viral RNA genome segment; The nucleotide sequence of a gene coding region; The nucleotide sequence of an RNA guide molecule; The nucleotide sequence of a DNA primer.
Adapted From
- http://purl.obolibrary.org/obo/NCIT_C45374
Primitive Class
This class is declared primitive and it does not have necessary and sufficient condiftions defined.
Primitive Rationale
There are insufficient constructs to create a set of necessary and sufficient conditions
Formal Axioms
First-Order Logic Axioms
NucleotideSequence(x) → BiologicalSequence(x) ∧ ∀y (genericallyDependsOnAtSomeTime(x, y) → (DeoxyribonucleicAcid(y) ∨ RibonucleicAcid(y)))
Semi-Formal Natural Language Axioms
if x is a ‘nucleotide sequence’ then x is a ‘biological sequence’ and x ‘generically depends on at some time’ only on some ‘deoxyribonucleic acid’ or ‘ribonucleic acid’
Description Logic
constr:NucleotideSequence ⊑ constr:BiologicalSequence
constr:NucleotideSequence ⊑ ∀ bfo:generically_depends_on_at_some_time .(constr:DeoxyribonucleicAcid ⊔ constr:RibonucleicAcid)
SubClassOf: constr:BiologicalSequence
SubClassOf: bfo:generically_depends_on_at_some_time only (constr:DeoxyribonucleicAcid or constr:RibonucleicAcid)
constr:NucleotideSequence DisjointWith: constr:AminoAcidSequence