O-glycan moiety
IRI: https://spec.industrialontologies.org/ontology/construct/OGlycanMoiety
Defined In: https://spec.industrialontologies.org/ontology/biopharma/MolecularEntity/
SubClass Of: chemical moiety
Class Hierarchy
owl:Thing › bfo:entity › bfo:continuant › bfo:independent continuant › bfo:material entity › chemical moiety › O-glycan moiety
Definition
chemical moiety that is the remaining portion of a glycan resulting from its covalent attachment to the side-chain hydroxyl oxygen of a serine, threonine, hydroxylysine, or hydroxyproline residue
Examples
- O-glycan moiety attached to a serine residue in a glycoprotein; O-glycan moiety attached to a threonine residue in a mucin-like domain; O-linked glycan moiety attached to hydroxylysine in a collagen-like protein
Adapted From
- http://purl.obolibrary.org/obo/CHEBI_59521
Primitive Class
This class is declared primitive and it does not have necessary and sufficient condiftions defined.
Primitive Rationale
This term is expected to remain primitive as the detailed treatment of chemical bonds, structure and formation is outside of the current scope of IOF. Other biological and chemical ontologies should be used for these purposes
Formal Axioms
First-Order Logic Axioms
OGlycanMoiety(x) → ChemicalMoiety(x)
Semi-Formal Natural Language Axioms
if x is an ‘O-glycan moiety’ then x is a ‘chemical moiety’
Description Logic
SubClassOf: constr:ChemicalMoiety